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massarray assay designer 4 0 software  (agena bioscience)


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    agena bioscience massarray assay designer 4 0 software
    Massarray Assay Designer 4 0 Software, supplied by agena bioscience, used in various techniques. Bioz Stars score: 96/100, based on 117 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/massarray assay designer 4 0 software/product/agena bioscience
    Average 96 stars, based on 117 article reviews
    massarray assay designer 4 0 software - by Bioz Stars, 2026-05
    96/100 stars

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    Fig. 2 Flowchart describing the algorithm of the snp-id program. The search_iplex.py script of the snp-id program requires an input file (json) that specifies all the reference genomes (Fasta), replicate alignments (BAM), and multi-genome alignment (XMFA). It scans the multi-genome alignment for candidate SNPs and tests for (i) poly- morphisms in flanking regions, (ii) homozygosity, and (iii) evidence in other replicates. SNPs that satisfy all selection criteria are printed out in a format suitable for MassARRAY Typer 4.0 Assay Designer Software
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    https://www.bioz.com/result/massarray typer 4 0 assay designer software/product/agena bioscience
    Average 96 stars, based on 1 article reviews
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    Fig. 2 Flowchart describing the algorithm of the snp-id program. The search_iplex.py script of the snp-id program requires an input file (json) that specifies all the reference genomes (Fasta), replicate alignments (BAM), and multi-genome alignment (XMFA). It scans the multi-genome alignment for candidate SNPs and tests for (i) poly- morphisms in flanking regions, (ii) homozygosity, and (iii) evidence in other replicates. SNPs that satisfy all selection criteria are printed out in a format suitable for MassARRAY Typer 4.0 Assay Designer Software

    Journal: Journal of Pest Science

    Article Title: Sequencing of Tuta absoluta genome to develop SNP genotyping assays for species identification

    doi: 10.1007/s10340-019-01116-6

    Figure Lengend Snippet: Fig. 2 Flowchart describing the algorithm of the snp-id program. The search_iplex.py script of the snp-id program requires an input file (json) that specifies all the reference genomes (Fasta), replicate alignments (BAM), and multi-genome alignment (XMFA). It scans the multi-genome alignment for candidate SNPs and tests for (i) poly- morphisms in flanking regions, (ii) homozygosity, and (iii) evidence in other replicates. SNPs that satisfy all selection criteria are printed out in a format suitable for MassARRAY Typer 4.0 Assay Designer Software

    Article Snippet: The list of SNPs that were identified using snp-id (Supplemental File 1) were then used as the input for the MassARRAY Typer 4.0 Assay Designer Software (Agena Bioscience, San Diego, CA, USA) to design iPLEX PCR and extension primers (Table 1).

    Techniques: Selection, Software